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Compaq and Pittsburg Supercomputing Center provide protein modeling on large-scale computational resources



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CASP 5Compaq and Pittsburgh Supercomputing Center (PSC) have teamed up to help advance the science of structural biology by making available large-scale computational resources to support CASP5. CASP (Critical Assessment of Techniques for Protein Structure Prediction) is a community-wide experiment that assesses various methodologies for accurately predicting the three-dimensional structure of proteins.

Related links

»
PSC press release
 
»
PSC Terascale Computing System
  » The BioCluster
 

This experiment, which is held every two years, helps this scientific field come to consensus on such questions as what is the most accurate methodology, which are the most cost-effective methods, and where should the community direct its efforts to achieve the most effectiveness.

Access to large-scale computational resources has been a barrier for some research groups. In an effort to remove that barrier, The National Science Foundation Partnerships for Advanced Computational Infrastructure program allocated computing time on the PSC Terascale Computing System (TCS) and Compaq is allocating computing time on its BioCluster system. To enable a common means to access these high-powered AlphaServer systems, Compaq and PSC will make available a computational grid environment.

This collaboration is intended to support researchers in their efforts to reach the next level of computational breakthroughs required to accurately predict the structure of proteins, and, thereby, understand structure-function relationships for improved drug discovery to benefit us all.
For more information about CASP including application process, visit http://predictioncenter.llnl.gov/

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